Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
atpDA(1)A(0)-type ATP synthase, subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane. (206 aa)    
Predicted Functional Partners:
atpI
A(1)A(0)-type ATP synthase, subunit I; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.999
atpK
A(1)A(0)-type ATP synthase, subunit K.
 
 0.999
atpE
A(1)A(0)-type ATP synthase, subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpC
A(1)A(0)-type ATP synthase, subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpF
A(1)A(0)-type ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpA
A(1)A(0)-type ATP synthase, subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.999
atpB
A(1)A(0)-type ATP synthase, subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.
 
 0.999
RCIX2024
Hypothetical protein.
    
 0.995
RCIX1862
Conserved GTP-binding protein (Ras family).
  
 0.638
gatA
glutamyl-tRNA(Gln) amidotransferase, subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
 
 0.552
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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