STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumBFumarate hydratase (fumarase), beta subunit. (194 aa)    
Predicted Functional Partners:
fumA
Fumarate hydratase (fumarase), alpha subunit.
 
 0.999
RCIX1755
Fe-S cluster-binding oxidoreductase component (HdrD-like).
    
 0.921
LRC216
Predicted fumarate reductase/succinate dehydrogenase Fe-S cluster-binding component (HdrD-like).
    
 0.916
LRC333
Predicted Fe-S cluster-binding oxidoreductase.
    
 0.916
RCIX780
Predicted Fe-S cluster-binding oxidoreductase.
    
 0.916
argH
Argininosuccinate lyase.
    
 0.848
aat-1
Putative aspartate aminotransferase.
    
 0.818
aat-5
Putative aspartate aminotransferase.
    
 0.818
RCIX2670
Putative cyclase.
    
  0.803
miaB
Putative 2-methylthioadenine synthetase.
     
 0.611
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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