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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX207Predicted Fe-S cluster-binding oxidoreductase. (481 aa)    
Predicted Functional Partners:
RCIX206
Conserved hypothetical protein.
  
    0.799
galE-1
Putative UDP-glucose 4-epimerase.
       0.727
RCIX1698
Conserved hypothetical protein.
  
  
 0.682
RCIX2213
Putative transcription regulator (ArsR family).
  
  
 0.682
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.678
RCIX208
Glycosyltransferase (family 2).
 
     0.626
RCIX1817
Conserved hypothetical protein (MiaB/NifB-like).
 
  
 0.543
RCIX1164
Hypothetical protein.
 
  
 0.487
ubiA-1
Putative 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.477
rfbB-1
dTDP-glucose 4,6-dehydratase.
       0.477
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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