Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX208Glycosyltransferase (family 2). (307 aa)    
Predicted Functional Partners:
RCIX206
Conserved hypothetical protein.
 
  
 0.666
RCIX207
Predicted Fe-S cluster-binding oxidoreductase.
 
   
 0.629
galE-1
Putative UDP-glucose 4-epimerase.
 
     0.606
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.593
RCIX1976
Signal transduction serine/threonine kinase.
 
 
 0.589
RCIX211
Hypothetical protein.
 
  
 0.585
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
  
  
 0.473
RCIX1921
Aminotransferase (DegT family); Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.469
rfbB-1
dTDP-glucose 4,6-dehydratase.
  
  
 0.459
ugd
UDP-glucose 6-dehydrogenase.
 
  
 0.458
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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