STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aor-1Tungsten-containing aldehyde:ferredoxin oxidoreductase. (630 aa)    
Predicted Functional Partners:
fdx4-2
4(4Fe-4S) polyferredoxin.
 
 
 
 0.936
fdx4-1
4(4Fe-4S) polyferredoxin.
 
 
 0.934
ttuD
Putative hydroxypyruvate reductase.
  
  
  0.912
aor-2
Putative tungsten-containing aldehyde:ferredoxin oxidoreductase.
  
  
0.908
dapA-2
Dihydrodipicolinate synthase.
       0.792
LRC334
ABC-type transport system, permease component.
 
   
 0.768
RCIX664
ABC-type transport system, permease component.
 
   
 0.680
RCIX2088
ThiS/MoaD sulfur transfer protein.
     
 0.676
moeA-1
Molybdopterin biosynthesis protein A.
 
   
 0.526
RCIX2092
Hypothetical protein.
       0.512
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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