Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2104Conserved hypothetical protein. (199 aa)    
Predicted Functional Partners:
LRC541
Transmembrane oligosaccharyltransferase.
  
     0.734
LRC539
Transmembrane oligosaccharyltransferase.
  
     0.732
RCIX403
Conserved hypothetical protein.
  
     0.723
RCIX2680
Conserved hypothetical protein.
  
     0.714
RCIX407
Conserved hypothetical protein.
  
     0.711
RCIX1848
Putative TatD-related deoxyribonuclease.
 
     0.706
RRC405
Conserved hypothetical protein.
  
     0.705
RCIX2675
Predicted phosphoglycerate mutase.
  
     0.704
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
  
     0.698
LRC558
Putative oligosaccharyltransferase.
  
     0.690
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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