STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2104Conserved hypothetical protein. (199 aa)    
Predicted Functional Partners:
LRC541
Transmembrane oligosaccharyltransferase.
  
     0.734
LRC539
Transmembrane oligosaccharyltransferase.
  
     0.732
RCIX403
Conserved hypothetical protein.
  
     0.723
RCIX2680
Conserved hypothetical protein.
  
     0.714
RCIX407
Conserved hypothetical protein.
  
     0.711
RRC405
Conserved hypothetical protein.
  
     0.705
RCIX2675
Predicted phosphoglycerate mutase.
  
     0.704
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
  
     0.698
LRC558
Putative oligosaccharyltransferase.
  
     0.690
tgt-1
Archaeosine tRNA-ribosyltransferase.
  
     0.689
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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