Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2106Conserved hypothetical protein. (263 aa)    
Predicted Functional Partners:
RCIX2105
Putative amino acid kinase.
       0.791
cysC
Putative adenylylsulfate kinase (APS kinase).
  
  
 0.646
RCIX1595
Putative trypsin-like protease.
   
 
 0.616
RRC204
Putative trypsin-like protease.
   
 
 0.616
RRC480
Putative trypsin-like protease.
   
 
 0.616
RCIX2738
Putative metallo-beta-lactamase.
 
  
 0.541
tfb
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
       0.538
RCIX2110
Conserved hypothetical protein.
       0.518
RCIX2111
Predicted metal-dependent phosphoesterase (PHP family).
 
     0.404
RCIX1004
Putative nucleoside 2-deoxyribosyltransferase.
 
     0.403
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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