Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX2113Putative signal transduction protein. (835 aa)    
Predicted Functional Partners:
cheW
Chemotaxis signal transducer.
  
 
 0.757
RCIX2191
Putative signal transduction histidine kinase.
 
   
 0.741
RCIX160
Predicted signal transduction histidine kinase.
 
   
 0.738
RCIX980
Putative signal transduction histidine kinase.
 
   
 0.738
RCIX156
Predicted signal transduction histidine kinase.
 
   
 0.736
RCIX2210
Putative signal transduction histidine kinase.
 
   
 0.735
LRC393
Predicted signal transduction histidine kinase.
 
   
 0.734
RCIX1290
Predicted signal transduction histidine kinase.
 
   
 0.733
LRC568
Conserved hypothetical protein.
   
 
 0.658
cheR
Chemotaxis MCP methyltransferase.
  
  
 0.649
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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