Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX213Predicted glycosyltransferase (group 1). (1015 aa)    
Predicted Functional Partners:
RCIX212
Putative glycosyltransferase (group 1).
 
     0.803
RCIX214
Predicted SAM-dependent methyltransferase.
 
   
 0.664
RCIX217
Putative ABC-type transport system, permease component (ABC-2 family).
 
  
 0.658
RCIX216
Putative ABC-type transport system, ATPase component.
 
 
 0.656
RCIX218
Putative glycosyltransferase (group 1).
 
     0.583
RCIX221
Glycosyltransferase (group 1).
 
     0.515
RCIX1246
Putative glycosyltransferase (family 2).
 
  
 0.513
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
 
  
 0.488
RCIX1093
Hypothetical protein.
   
 
 0.473
RRC150
Putative hydrolase.
   
 
 0.473
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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