Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2161Hypothetical protein. (133 aa)    
Predicted Functional Partners:
RCIX2160
Conserved hypothetical protein.
 
     0.806
RCIX100
Conserved hypothetical protein.
       0.656
hgdC-1
Putative 2-hydroxyglutaryl-CoA dehydratase activator, component C (archerase).
 
     0.649
LRC169
Conserved hypothetical protein.
       0.591
LRC172
Conserved hypothetical protein.
       0.590
LRC174
Conserved hypothetical protein.
       0.590
RCIX2157
Conserved hypothetical protein.
 
     0.565
pcm
Putative protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
 
     0.546
LRC167
Conserved hypothetical protein; Belongs to the UPF0288 family.
 
     0.526
RCIX2156
Conserved hypothetical protein.
 
     0.519
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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