Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2169Putative acetyltransferase. (165 aa)    
Predicted Functional Partners:
RCIX2170
Hypothetical protein.
 
     0.915
argF
Ornithine carbamoyltransferase.
       0.791
RCIX582
Conserved hypothetical protein (PcrB-like); Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
   
 0.739
RCIX581
Conserved hypothetical protein (PcrB-like); Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
   
 0.737
purD
Phosphoribosylamine-glycine ligase.
       0.610
RCIX363
Putative sugar-phosphate adenylyltransferase.
  
  
 0.594
RCIX1921
Aminotransferase (DegT family); Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.527
ubiA-1
Putative 4-hydroxybenzoate octaprenyltransferase.
     
 0.499
ubiA-2
Putative 4-hydroxybenzoate octaprenyltransferase.
     
 0.499
idhA
Putative myo-inositol 2-dehydrogenase.
 
  
 0.402
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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