STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX217Putative ABC-type transport system, permease component (ABC-2 family). (264 aa)    
Predicted Functional Partners:
RCIX216
Putative ABC-type transport system, ATPase component.
 
 0.999
RCIX221
Glycosyltransferase (group 1).
 
  
 0.791
RCIX219
Predicted glucosyltransferase (group 1).
  
  
 0.744
LRC548
Putative glycosyltransferase (family 2).
 
  
 0.725
RCIX218
Putative glycosyltransferase (group 1).
 
     0.702
RCIX214
Predicted SAM-dependent methyltransferase.
 
     0.690
RCIX213
Predicted glycosyltransferase (group 1).
 
  
 0.671
RCIX363
Putative sugar-phosphate adenylyltransferase.
  
  
 0.567
RCIX212
Putative glycosyltransferase (group 1).
  
  
 0.541
RCIX1460
Glycosyltransferase (family 2).
 
  
 0.524
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.