STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2193Predicted transcription regulator (ArsR family). (250 aa)    
Predicted Functional Partners:
RCIX2192
Conserved hypothetical protein.
 
     0.836
LRC349
Conserved hypothetical protein.
 
   
 0.682
RCIX2194
Conserved hypothetical protein.
 
     0.648
RRC513
Conserved hypothetical protein.
  
     0.593
LRC180
Conserved hypothetical protein.
  
     0.531
RCIX2650
Conserved hypothetical protein.
  
     0.531
RCIX2213
Putative transcription regulator (ArsR family).
  
     0.526
mtd
Coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
  
     0.524
RRC405
Conserved hypothetical protein.
 
   
 0.512
RRC465
Conserved hypothetical protein.
  
  
 0.512
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.