Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX2198Hypothetical protein. (876 aa)    
Predicted Functional Partners:
RCIX1862
Conserved GTP-binding protein (Ras family).
    
 0.922
RCIX2180
ABC-type transport system, ATPase component.
    
 0.701
rpl40e
50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
    
  0.597
bglX
Putative thermostable beta-glucosidase (glycoside hydrolase family 3).
 
   
 0.566
eif2b2
Translation initiation factor 2B, subunit 2; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
 
 0.557
atpI
A(1)A(0)-type ATP synthase, subunit I; Belongs to the V-ATPase 116 kDa subunit family.
   
 0.531
RCIX1976
Signal transduction serine/threonine kinase.
  
 
 0.522
RCIX2197
Sulfite reductase, assimilatory.
       0.521
ilvB
Acetolactate synthase, large subunit.
    
   0.514
pdc
Putative pyruvate decarboxylase; Similar to other TPP enzymes, such as pyruvate oxidase (Pox)(EC 1.2.3.3) and pyruvate dehydrogenase (Pdh) (EC 1.2.2.2).
    
   0.514
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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