Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2200Conserved hypothetical protein. (237 aa)    
Predicted Functional Partners:
RCIX733
Predicted secreted protein.
  
     0.670
LRC454
Conserved hypothetical protein.
  
     0.641
RCIX1235
Conserved hypothetical protein.
  
     0.595
RCIX1420
Putative transcriptional regulator (ArsR family).
  
     0.546
LRC257
Hypothetical protein.
  
     0.545
RCIX2643
Conserved hypothetical protein.
  
     0.540
RCIX1553
Predicted archaea-specific pyridoxal phosphate-dependent enzyme; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
 
     0.536
RCIX2201
Putative intracellular protease (ThiJ/PfpI family).
       0.533
RCIX1950
Conserved hypothetical protein.
 
     0.521
RRC217
Conserved hypothetical protein.
  
     0.518
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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