STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsp-10Putative bacterial type II secretion system protein. (700 aa)    
Predicted Functional Partners:
gsp-9
Putative bacterial type II secretion system protein.
 
  
 0.951
gsp-4
Putative bacterial type II secretion system protein.
 
  
 0.791
gsp-7b
Putative bacterial type II secretion system protein, C-terminal fragment.
 
  
 0.779
gsp-7a
Putative bacterial type II secretion system protein, N-terminal fragment.
 
  
 0.760
gsp-1
Putative bacterial type II secretion system protein.
 
  
 0.727
RCIX2215
Conserved hypothetical protein.
 
   
 0.703
LRC499
Conserved hypothetical protein; Similar to Archaeoglobus fulgidus hypo AAB90187.1.
 
  
 0.657
RCIX2219
Conserved hypothetical protein.
 
     0.481
RCIX1255
Putative ATPase involved in chromosome partitioning.
 
  
 0.466
RCIX468
Putative chromosome partitioning ATPase (MinD family).
 
  
 0.446
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.