Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX223Conserved hypothetical protein; Putative cobyrinic acid ac-diamide synthase cbiA 6.3.5.9 gene synonym: cobB. (360 aa)    
Predicted Functional Partners:
acdAB
acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion.
 
   
 0.773
pgk-1
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
  
 0.500
RCIX219
Predicted glucosyltransferase (group 1).
 
   
 0.433
rbcL
Ribulose 1,5-bisphosphate carboxylase (RuBisCO),large subunit.
       0.433
RCIX221
Glycosyltransferase (group 1).
 
   
 0.414
RCIX218
Putative glycosyltransferase (group 1).
 
     0.405
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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