Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2240Putative hydrolase (alpha/beta fold family). (289 aa)    
Predicted Functional Partners:
RCIX2241
ABC-type transport system, ATPase component.
 
  
 0.623
RCIX1166
Hypothetical protein.
   
 0.593
RCIX1649
Putative serine/threonine protein phosphatase.
   
 0.593
RCIX2525
Conserved hypothetical protein.
   
 0.593
RCIX2756
Putative metallophosphoesterase.
   
 0.593
RRC185
Hypothetical protein.
   
 0.593
ndh
Putative NADH dehydrogenase.
  
 
 0.550
RCIX2239
Hypothetical protein.
       0.532
RCIX2242
ABC-type transport system, permease component.
       0.518
paaJ
acetyl-CoA C-acetyltransferase (thiolase I).
 
  
 0.439
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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