Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX2250Predicted peptidase (A24 family). (272 aa)    
Predicted Functional Partners:
gsp-1
Putative bacterial type II secretion system protein.
 
   
 0.791
gsp-3
Putative bacterial type II secretion system ATPase.
 
   
 0.766
RCIX1848
Putative TatD-related deoxyribonuclease.
 
     0.670
LRC499
Conserved hypothetical protein; Similar to Archaeoglobus fulgidus hypo AAB90187.1.
 
   
 0.652
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
 
   
 0.642
gsp-9
Putative bacterial type II secretion system protein.
 
   
 0.625
gsp-4
Putative bacterial type II secretion system protein.
 
   
 0.623
hisI
phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
       0.622
RCIX710
Conserved hypothetical protein; Belongs to the UPF0200 family.
 
  
 0.622
RCIX1274
Putative transcription regulator (ArsR family).
 
   
 0.611
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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