STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pflAPutative pyruvate formate-lyase activating enzyme. (340 aa)    
Predicted Functional Partners:
LRC400
Conserved hypothetical protein; Belongs to the MEMO1 family.
     0.911
RCIX292
Conserved hypothetical protein.
 
     0.782
RRC49
Putative iron-containing alcohol dehydrogenase.
  
  
 0.591
nrdD
Anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent).
  
  
 0.588
gabD
Succinate-semialdehyde dehydrogenase.
  
  
 0.501
RCIX602
Hypothetical protein.
  
    0.468
RCIX2197
Sulfite reductase, assimilatory.
  
  
 0.418
RCIX2692
Sulfite reductase, assimilatory.
  
  
 0.418
pdhB
Pyruvate dehydrogenase complex E1, transketolase beta subunit.
   
  
 0.405
pdhC
Pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase.
   
  
 0.404
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.