Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scpBPutative chromosome segregation/condensation protein B. (197 aa)    
Predicted Functional Partners:
scpA
Putative chromosome segregation/condensation protein A.
 
 
 0.999
smc
Chromosome segregation/partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.985
RCIX2260
Hypothetical protein.
       0.713
purD
Phosphoribosylamine-glycine ligase.
     
 0.604
mat
Archaeal S-adenosylmethionine synthetase.
       0.563
hflX
Conserved GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
 
   
 0.508
nusA
Transcription termination factor NusA; Participates in transcription termination. Belongs to the NusA family.
 
    0.471
LRC265
Conserved hypothetical protein.
       0.470
rps8e
30S ribosomal protein S8E.
       0.470
RCIX2261
Conserved hypothetical protein; TAT signal.
       0.466
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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