STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpAPutative chromosome segregation/condensation protein A. (241 aa)    
Predicted Functional Partners:
scpB
Putative chromosome segregation/condensation protein B.
 
 
 0.999
smc
Chromosome segregation/partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.999
RCIX2260
Hypothetical protein.
       0.712
RRC96
Predicted DNA repair ATPase (Rad50-like).
 
   
 0.627
recJ
Putative single-stranded DNA-specific exonuclease.
 
    0.576
mat
Archaeal S-adenosylmethionine synthetase.
       0.563
pcn
Putative DNA polymerase sliding clamp (proliferating cell nuclear antigen); Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.
 
  
 0.554
LRC57
Putative single-stranded DNA-specific exonuclease (RecJ-like).
 
    0.508
RCIX710
Conserved hypothetical protein; Belongs to the UPF0200 family.
 
    0.504
RCIX1276
Putative phosphoesterase.
 
    0.490
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.