STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2274Putative signal transduction protein. (810 aa)    
Predicted Functional Partners:
RCIX443
Putative response regulator (CheY-like).
 
 
 0.887
pdhC
Pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase.
    
 0.826
RCIX2272
Hypothetical protein.
  
  
 0.736
pdhB
Pyruvate dehydrogenase complex E1, transketolase beta subunit.
    
 0.702
RCIX1890
Putative response regulator.
  
 
 0.672
cheY
Chemotaxis response regulator.
 
 
 
 0.659
RRC476
Putative response regulator (CheY-like).
 
 
 
 0.649
RCIX2113
Putative signal transduction protein.
  
 
 0.605
LRC597
Hypothetical protein.
   
 
 0.593
RCIX1840
Putative response regulator (CheY-like).
   
 
 0.593
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.