Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LRC263 | LRC70 | LRC263 | LRC70 | Hypothetical protein. | Putative DNA/RNA helicase (SNF2 family). | 0.873 |
LRC263 | RCIX407 | LRC263 | RCIX407 | Hypothetical protein. | Conserved hypothetical protein. | 0.922 |
LRC263 | fen | LRC263 | RCIX607 | Hypothetical protein. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.653 |
LRC263 | pcn | LRC263 | RCIX2293 | Hypothetical protein. | Putative DNA polymerase sliding clamp (proliferating cell nuclear antigen); Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. | 0.974 |
LRC263 | pol2a | LRC263 | RCIX1121 | Hypothetical protein. | DNA-directed DNA polymerase D, small subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family. | 0.674 |
LRC263 | polB-1 | LRC263 | LRC154 | Hypothetical protein. | DNA-directed DNA polymerase B. | 0.842 |
LRC263 | priB | LRC263 | RCIX2295 | Hypothetical protein. | DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. | 0.855 |
LRC263 | rfcL | LRC263 | RCIX1805 | Hypothetical protein. | Replication factor C, large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.898 |
LRC263 | rfcS | LRC263 | LRC39 | Hypothetical protein. | Replication factor C (clamp loader), small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. | 0.883 |
LRC263 | rpl40e | LRC263 | RCIX1433 | Hypothetical protein. | 50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.621 |
LRC70 | LRC263 | LRC70 | LRC263 | Putative DNA/RNA helicase (SNF2 family). | Hypothetical protein. | 0.873 |
LRC70 | RCIX407 | LRC70 | RCIX407 | Putative DNA/RNA helicase (SNF2 family). | Conserved hypothetical protein. | 0.873 |
LRC70 | fen | LRC70 | RCIX607 | Putative DNA/RNA helicase (SNF2 family). | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.981 |
LRC70 | pcn | LRC70 | RCIX2293 | Putative DNA/RNA helicase (SNF2 family). | Putative DNA polymerase sliding clamp (proliferating cell nuclear antigen); Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. | 0.966 |
LRC70 | polB-1 | LRC70 | LRC154 | Putative DNA/RNA helicase (SNF2 family). | DNA-directed DNA polymerase B. | 0.715 |
LRC70 | rfcL | LRC70 | RCIX1805 | Putative DNA/RNA helicase (SNF2 family). | Replication factor C, large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.660 |
LRC70 | rfcS | LRC70 | LRC39 | Putative DNA/RNA helicase (SNF2 family). | Replication factor C (clamp loader), small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. | 0.660 |
LRC70 | rpl40e | LRC70 | RCIX1433 | Putative DNA/RNA helicase (SNF2 family). | 50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.940 |
RCIX407 | LRC263 | RCIX407 | LRC263 | Conserved hypothetical protein. | Hypothetical protein. | 0.922 |
RCIX407 | LRC70 | RCIX407 | LRC70 | Conserved hypothetical protein. | Putative DNA/RNA helicase (SNF2 family). | 0.873 |
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