Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2327Conserved hypothetical protein. (317 aa)    
Predicted Functional Partners:
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 0.952
RCIX2675
Predicted phosphoglycerate mutase.
  
 0.895
RRC355
Conserved hypothetical protein.
   
 0.875
RRC248
Hypothetical protein.
    
 0.792
RRC278
Hypothetical protein.
    
 0.792
RCIX2756
Putative metallophosphoesterase.
  
 0.736
RCIX1649
Putative serine/threonine protein phosphatase.
  
 0.734
RRC95
Predicted DNA repair exonuclease (Rad32/Mre11-like).
  
 0.724
RCIX1166
Hypothetical protein.
   
 0.698
RCIX2525
Conserved hypothetical protein.
   
 0.698
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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