Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2333Predicted nitroreductase. (171 aa)    
Predicted Functional Partners:
fadD
Putative long chain fatty-acid CoA ligase.
   
 
 0.680
cadA
Putative Cd(2+)-translocating P-type ATPase.
  
  
 0.610
hflX
Conserved GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.573
RCIX2079
Conserved hypothetical protein.
  
  
 0.538
LRC321
ABC-type multidrug transport system, permease component (ABC-2 family).
  
  
 0.451
RCIX1830
ABC-type transport system, permease component (ABC-2 family) (NodJ-like).
  
  
 0.451
RRC83
ABC-type transport system, permease component (ABC-2 family).
  
  
 0.451
RCIX2336
Putative transcription regulator (ArsR family).
     
 0.450
LRC591
Hypothetical protein.
  
  
 0.424
gloA
Putative lactoylglutathione lyase.
  
  
 0.424
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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