Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RCIX2343Putative transcription regulator (AbrB family). (76 aa)    
Predicted Functional Partners:
RCIX2342
Conserved hypothetical protein.
 
     0.936
RCIX2341
2(4Fe-4S) ferredoxin-domain protein.
       0.917
RCIA168
Hypothetical protein.
       0.532
RCIX1000
Predicted ABC-type transport system, periplasmic component.
 
     0.417
RCIX678
Putative cytochrome c biogenesis protein.
  
     0.417
RCIX1003
Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1.
  
     0.412
RRC465
Conserved hypothetical protein.
  
     0.409
LRC520
Hypothetical protein.
  
     0.404
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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