STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2398Predicted metallo-beta-lactamase (ComE-like). (313 aa)    
Predicted Functional Partners:
RCIX2399
Conserved hypothetical protein.
       0.693
RCIX2396
Hydrolase (alpha/beta fold family).
     
 0.601
ruvA
Holliday junction resolvasome, DNA-binding subunit.
 
   
 0.491
cbiQ-3
Putative ABC-type cobalt import system, permease component.
 
     0.418
birA
biotin--(acetyl-CoA-carboxylase) synthetase.
 
   
 0.415
RCIX2394
Putative ATP-dependent helicase.
       0.414
RCIX2250
Predicted peptidase (A24 family).
  
  
 0.404
RCIX944
Hypothetical protein.
  
  
 0.404
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.