STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2443Conserved hypothetical protein. (184 aa)    
Predicted Functional Partners:
bcp-4
Peroxiredoxin-like bacterioferritin comigratory protein.
       0.585
RCIX2447
Hypothetical protein.
 
     0.574
RCIX1848
Putative TatD-related deoxyribonuclease.
  
     0.569
pfdA
Putative chaperonin cofactor prefoldin, alpha subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
     0.514
RCIX285
Conserved hypothetical protein; Belongs to the UPF0292 family.
  
   
 0.512
cysH-1
Putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase).
  
     0.510
RCIX2118
Conserved hypothetical protein.
  
     0.497
RCIX2250
Predicted peptidase (A24 family).
  
     0.496
trmY
Conserved hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
   
 0.492
cysH-2
Putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase).
  
     0.478
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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