STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2446Predicted membrane protease subunit (stomatin family). (372 aa)    
Predicted Functional Partners:
RCIX2447
Hypothetical protein.
 
  
 0.937
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.843
RCIX1707
Conserved hypothetical protein.
  
 0.840
dnaK
Chaperonin Hsp70; Acts as a chaperone.
  
 0.781
hflX
Conserved GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.734
LRC556
Hypothetical protein.
 
 
 0.673
RCIX1033
Hypothetical protein.
 
 
 0.673
echD
Ech hydrogenase, subunit D.
   
 
 0.668
RCIX1174
Putative acetoin utilization protein (histone deacetylase superfamily).
  
 
 0.599
bcp-4
Peroxiredoxin-like bacterioferritin comigratory protein.
     
 0.598
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.