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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX249Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3. (338 aa)    
Predicted Functional Partners:
RCIX248
Conserved hypothetical protein.
 
     0.815
RCIX251
Oligosaccharide repeat unit transporter.
 
     0.686
RCIX1950
Conserved hypothetical protein.
 
     0.677
RCIX243
Conserved hypothetical protein.
 
     0.671
RCIX1932
Conserved hypothetical protein.
 
     0.658
RCIX1982
Hypothetical protein.
  
     0.648
LRC298
Hypothetical protein; Identical to orf9 of fosmid clone 3D10mr4.
  
     0.577
RCIX1897
Conserved hypothetical protein.
  
     0.564
RCIX1274
Putative transcription regulator (ArsR family).
  
     0.534
RCIX2491
Hypothetical protein.
  
     0.524
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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