Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2509Predicted response regulator. (104 aa)    
Predicted Functional Partners:
cheA
Chemotaxis histidine kinase.
  
 
 0.964
cheW
Chemotaxis signal transducer.
  
 0.957
tlpC
Chemotaxis signal transducer.
  
 0.938
cheC
Chemotaxis MCP methylation-inhibitor.
  
 
 0.936
RCIX2603
Predicted chemotaxis protein (CheW/CheC-like).
  
 
 0.936
cheY
Chemotaxis response regulator.
  
  
  0.915
RRC476
Putative response regulator (CheY-like).
  
  
 
0.902
RCIX1656
Putative signal transduction histidine kinase.
     
  0.900
LRC568
Conserved hypothetical protein.
   
 
 0.703
cheB
Chemotaxis methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.525
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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