Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX251Oligosaccharide repeat unit transporter. (426 aa)    
Predicted Functional Partners:
RCIX249
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
 
     0.686
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
 
  
 0.603
RCIX248
Conserved hypothetical protein.
 
   
 0.594
RCIX252
Hypothetical protein.
       0.559
rfbB-1
dTDP-glucose 4,6-dehydratase.
  
  
 0.549
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.549
RCIX2643
Conserved hypothetical protein.
  
     0.536
wecB
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.531
RCIX1491
Conserved hypothetical protein.
 
    0.524
RRC427
Conserved hypothetical protein.
 
    0.492
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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