Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2510Predicted response regulator. (117 aa)    
Predicted Functional Partners:
LRC568
Conserved hypothetical protein.
   
 
 0.703
cheA
Chemotaxis histidine kinase.
  
  
 0.655
cheW
Chemotaxis signal transducer.
  
 
 0.589
RRC477
Putative signal transduction histidine kinase.
 
 
 0.540
LRC113
Predicted signal transduction histidine kinase.
 
 
 0.539
cheB
Chemotaxis methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.525
RCIX1084
Putative signal transduction histidine kinase.
 
 
 0.520
RCIX170
Predicted signal transduction histidine kinase.
 
 
 
 0.489
RCIX1277
Predicted signal transduction histidine kinase.
 
 
 
 0.476
RCIX1081
Predicted signal transduction histidine kinase.
 
 
 
 0.473
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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