Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2525Conserved hypothetical protein. (1055 aa)    
Predicted Functional Partners:
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.792
LRC70
Putative DNA/RNA helicase (SNF2 family).
 
 
 0.779
RCIA187
Hypothetical protein.
       0.773
RRC248
Hypothetical protein.
   
 0.739
RRC278
Hypothetical protein.
   
 0.739
RCIX1976
Signal transduction serine/threonine kinase.
   
 0.732
rpl3p
50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 0.713
LRC353
mRNA 3-end processing factor.
   
 0.698
RCIX1272
Conserved hypothetical protein.
   
 0.698
RCIX2327
Conserved hypothetical protein.
   
 0.698
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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