STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2536Putative DNA glycosylase. (212 aa)    
Predicted Functional Partners:
pcn
Putative DNA polymerase sliding clamp (proliferating cell nuclear antigen); Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.
   
 
 0.886
xthA
Exodeoxyribonuclease III; Gene synonym: exoA.
   
 0.832
RCIX2491
Hypothetical protein.
   
 0.832
RCIX2501
Predicted endonuclease/exonuclease.
   
 0.832
RCIX2537
Hypothetical protein.
  
    0.645
RRC63
Predicted endonuclease III.
 
  
 0.622
LRC494
Hypothetical protein.
  
  
 0.620
ruvB
Holliday junction resolvasome, helicase subunit.
  
   
 0.619
ruvA
Holliday junction resolvasome, DNA-binding subunit.
  
   
 0.614
RCIA88
Predicted 6-O-methylguanine-DNA methyltransferase.
 
   
 0.604
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.