STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2571Conserved hypothetical protein. (207 aa)    
Predicted Functional Partners:
secY
Protein translocase, subunit Y; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
 
    0.775
RCIX1118
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.723
RCIX408
Conserved hypothetical protein.
  
     0.723
RCIX752
Signal sequence peptidase.
  
     0.720
LRC541
Transmembrane oligosaccharyltransferase.
  
     0.718
LRC539
Transmembrane oligosaccharyltransferase.
  
     0.715
RCIX2680
Conserved hypothetical protein.
  
     0.715
RCIX1120
Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2.
  
     0.713
RCIX1209
Hypothetical protein.
  
     0.713
RCIX407
Conserved hypothetical protein.
  
     0.712
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.