STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmd-2Putative 4-carboxymuconolactone decarboxylase. (124 aa)    
Predicted Functional Partners:
RCIX2593
Hypothetical protein.
 
     0.541
prx1-2
1-cysteine peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
 
  
 0.526
hibD
Putative 3-hydroxyisobutyrate dehydrogenase.
  
  
 0.510
RCIX2595
Hypothetical protein.
       0.474
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.459
dfx
Desulfoferrodoxin (2-Fe-SOR).
  
  
 0.448
sor
Rubredoxin superoxide reductase (1-Fe-SOR).
  
  
 0.448
gabD
Succinate-semialdehyde dehydrogenase.
 
  
 0.427
prx2-1
2-cysteine peroxiredoxin.
  
  
 0.421
prx2-2
2-cysteine peroxiredoxin.
  
  
 0.421
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.