Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2633Predicted NADPH:quinone reductase (alcohol dehydrogenase superfamily). (309 aa)    
Predicted Functional Partners:
fadD
Putative long chain fatty-acid CoA ligase.
  
 
 0.778
ppiB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin type).
  
 
 0.736
gabD
Succinate-semialdehyde dehydrogenase.
 
 
 0.727
RCIX1976
Signal transduction serine/threonine kinase.
    
 
 0.726
RCIX1174
Putative acetoin utilization protein (histone deacetylase superfamily).
  
 
 0.684
aqpM
Putative aquaporin.
   
 
 0.644
RRC248
Hypothetical protein.
   
 
 0.602
RRC278
Hypothetical protein.
   
 
 0.602
cdc48-3
Cell division cycle protein 48.
   
 
 0.601
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
   
 
 0.601
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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