STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menA-2Putative 1,4-dihydroxy-2-naphtoate octaprenyl transferase. (321 aa)    
Predicted Functional Partners:
menA-1
Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
  
  
 
0.922
hmgA
3-hydroxy-3-methylglutaryl-coenzyme a reductase (hmg-coa reductase); Belongs to the HMG-CoA reductase family.
   
 
 0.848
hmgA-2
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.848
RCIX1132
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.841
ubiA-1
Putative 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.660
ubiA-2
Putative 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.633
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.599
LRC394
Putative prenyltransferase (UbiA family).
    
 0.582
RCIX2656
Hypothetical protein.
       0.565
RCIX2491
Hypothetical protein.
 
   
 0.444
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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