Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2658ABC-type transport system, ATPase component. (256 aa)    
Predicted Functional Partners:
RCIX2659
ABC-type transport system, permease component.
 
 
 0.996
RCIX2660
ABC-type transport system, periplasmic component.
 
 
 0.963
RRC301
Putative ABC-type transport system, permease component.
 
 
 0.959
RCIX829
ABC-type transport system, periplasmic component.
 
 
 0.937
fwdE
Tungsten formylmethanofuran dehydrogenase,subunit E.
  
    0.515
modB
ABC-type molybdenum import system, permease component.
 
  
 0.432
rpl2p
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
     0.418
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
   
 0.408
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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