Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX267Putative alkaline serine protease; Belongs to the peptidase S8 family. (795 aa)    
Predicted Functional Partners:
RCIX1104
Putative proteinase.
  
 
 
0.804
RCIX1761
Predicted regulator of chromosome condensation.
 
 
 0.646
LRC128
Predicted regulator of chromosome condensation.
  
 
 0.599
LRC300
Hypothetical protein; Identical to orf11 of fosmid clone 3D10mr4.
  
 
 0.599
RCIX1335
Predicted regulator of chromosome condensation.
  
 
 0.599
RCIX1585
Predicted regulator of chromosome condensation.
  
 
 0.599
RCIX492
Predicted regulator of chromosome condensation.
  
 
 0.599
RCIX807
Predicted regulator of chromosome condensation; Similar to RCIX819.
  
 
 0.599
RCIX819
Predicted regulator of chromosome condensation; Similar to RCIX807.
  
 
 0.599
RCIX450
Putative pheromone shutdown protein (TraB family).
   
 
 0.580
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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