STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2702Hypothetical protein. (301 aa)    
Predicted Functional Partners:
RCIX2705
Putative ATPase (AAA superfamily).
  
  
 0.867
RCIX1976
Signal transduction serine/threonine kinase.
  
 0.866
RCIX2706
Hypothetical protein.
       0.680
RCIX2701
Putative peptidase (U62 family).
     
 0.645
RCIX2700
Predicted peptidase (U62 family).
       0.625
RCIX1489
Hypothetical protein.
  
  
 0.552
RCIX1698
Conserved hypothetical protein.
  
 
 0.528
RCIX2213
Putative transcription regulator (ArsR family).
  
 
 0.528
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
  
 0.504
RCIX2708
Predicted FAD-dependent oxidoreductase.
  
  
 0.484
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.