STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX319Putative aldo/keto reductase (2[4Fe-4S] ferredoxin-domain protein). (374 aa)    
Predicted Functional Partners:
RCIX848
Conserved hypothetical protein.
 
 
   0.763
mvhD-1
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit.
  
   0.738
mvhD-2
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit.
  
   0.738
pyrK
Predicted dihydroorotate dehydrogenase, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
   0.619
RRC284
Predicted oxidoreductase (cytochrome-c3 hydrogenase, gamma subunit family).
  
   0.619
dmpI-1
Putative 4-oxalocrotonate tautomerase.
 
     0.600
RCIX322
Conserved hypothetical protein.
  
    0.463
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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