Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RCIX322Conserved hypothetical protein. (256 aa)    
Predicted Functional Partners:
LRC228
Putative cytochrome c biogenesis protein.
  
    0.696
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
  
  
 0.562
dmpI-1
Putative 4-oxalocrotonate tautomerase.
       0.508
LRC111
Putative transporter (NRAMP family).
  
  
 0.488
RCIX319
Putative aldo/keto reductase (2[4Fe-4S] ferredoxin-domain protein).
  
    0.460
LRC575
Putative Fe-dependent transcription repressor.
  
  
 0.454
RCIX1349
Fe-dependent transcription repressor (FeoA family).
  
  
 0.454
RCIX2300
Predicted cation efflux protein.
  
  
 0.452
RCIX76
Rieske Fe-S protein (FAD-dependent oxidoreductase family).
 
  
 0.445
RCIX659
Hypothetical protein.
  
    0.440
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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