STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX322Conserved hypothetical protein. (256 aa)    
Predicted Functional Partners:
LRC111
Putative transporter (NRAMP family).
  
  
 0.616
LRC228
Putative cytochrome c biogenesis protein.
  
    0.589
RCIX2300
Predicted cation efflux protein.
  
  
 0.582
dmpI-1
Putative 4-oxalocrotonate tautomerase.
       0.508
LRC575
Putative Fe-dependent transcription repressor.
  
  
 0.497
RCIX1349
Fe-dependent transcription repressor (FeoA family).
  
  
 0.497
RCIX76
Rieske Fe-S protein (FAD-dependent oxidoreductase family).
 
  
 0.480
RCIX319
Putative aldo/keto reductase (2[4Fe-4S] ferredoxin-domain protein).
  
    0.463
RCIX678
Putative cytochrome c biogenesis protein.
  
    0.429
RCIX659
Hypothetical protein.
  
    0.428
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.