Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX329Hypothetical protein. (142 aa)    
Predicted Functional Partners:
RCIX328
Hypothetical protein.
       0.904
RCIX327
Hypothetical protein.
       0.874
RCIX331
Hypothetical protein.
       0.870
RCIX330
Hypothetical protein.
       0.868
RCIX326
Conserved hypothetical protein.
       0.791
RCIX332
Hypothetical protein.
       0.564
RCIX325
Conserved hypothetical protein.
       0.470
RCIX950
Conserved hypothetical protein.
       0.470
hisS
histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.423
gsp-8
Putative bacterial type II secretion system protein.
       0.418
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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