Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX337Similarities to hypothetical protein of haloarcula. (208 aa)    
Predicted Functional Partners:
RCIX336
Hypothetical protein.
       0.799
RCIX340
Hypothetical protein.
       0.791
RCIX345
Similarities to hypothetical protein of haloarcula.
       0.736
RCIX343
Conserved hypothetical protein.
       0.726
RCIX342
Hypothetical protein.
       0.716
RCIX347
Similarities to hypothetical protein of haloarcula.
       0.490
RCIX355
Similarities to hypothetical protein of haloarcula.
       0.489
RCIX335
Hypothetical protein.
       0.485
RCIX353
Hypothetical protein.
       0.471
RCIX351
Hypothetical protein.
       0.469
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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