Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX343Conserved hypothetical protein. (261 aa)    
Predicted Functional Partners:
RCIX345
Similarities to hypothetical protein of haloarcula.
      
0.792
RCIX342
Hypothetical protein.
       0.781
RCIX336
Hypothetical protein.
       0.726
RCIX337
Similarities to hypothetical protein of haloarcula.
       0.726
RCIX340
Hypothetical protein.
       0.715
RCIX347
Similarities to hypothetical protein of haloarcula.
       0.505
RCIX349
Similarities to hypothetical protein of haloarcula.
       0.505
RCIX355
Similarities to hypothetical protein of haloarcula.
       0.502
RCIX351
Hypothetical protein.
       0.487
RCIX352
Hypothetical protein.
       0.481
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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