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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX343Conserved hypothetical protein. (261 aa)    
Predicted Functional Partners:
RCIX345
Similarities to hypothetical protein of haloarcula.
      
0.788
RCIX342
Hypothetical protein.
       0.782
RCIX336
Hypothetical protein.
       0.721
RCIX337
Similarities to hypothetical protein of haloarcula.
       0.721
RCIX340
Hypothetical protein.
       0.717
RCIX347
Similarities to hypothetical protein of haloarcula.
       0.496
RCIX349
Similarities to hypothetical protein of haloarcula.
       0.496
RCIX355
Similarities to hypothetical protein of haloarcula.
       0.493
RCIX351
Hypothetical protein.
       0.489
RCIX352
Hypothetical protein.
       0.480
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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