RCIX411 protein (Methanocella arvoryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RCIX411

Ribonuclease II family protein, C-terminal fragment. (213 aa)

Predicted Functional Partners:

csl4

0.933

rrp42p

0.931

rrp41p

0.926

rrp4

0.922

RCIX2092

0.809

rps17p

0.799

rps15p

0.788

rps4p

0.785

rps12p

0.781

rps7p

0.777

Your Current Organism:

Methanocella arvoryzae

NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCIX2092	RCIX411	RCIX2092	RCIX411	Hypothetical protein.	Ribonuclease II family protein, C-terminal fragment.	0.809
RCIX2092	csl4	RCIX2092	LRC269	Hypothetical protein.	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.710
RCIX2092	rps15p	RCIX2092	LRC56	Hypothetical protein.	30S ribosomal protein S15P.	0.412
RCIX2092	rrp4	RCIX2092	RCIX2123	Hypothetical protein.	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.	0.758
RCIX2092	rrp41p	RCIX2092	RCIX2124	Hypothetical protein.	Putative exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails.	0.815
RCIX2092	rrp42p	RCIX2092	RCIX2125	Hypothetical protein.	Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.	0.788
RCIX411	RCIX2092	RCIX411	RCIX2092	Ribonuclease II family protein, C-terminal fragment.	Hypothetical protein.	0.809
RCIX411	csl4	RCIX411	LRC269	Ribonuclease II family protein, C-terminal fragment.	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.933
RCIX411	rps12p	RCIX411	LRC361	Ribonuclease II family protein, C-terminal fragment.	30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.781
RCIX411	rps15p	RCIX411	LRC56	Ribonuclease II family protein, C-terminal fragment.	30S ribosomal protein S15P.	0.788
RCIX411	rps17p	RCIX411	RCIX2553	Ribonuclease II family protein, C-terminal fragment.	30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.799
RCIX411	rps4p	RCIX411	RCIX2581	Ribonuclease II family protein, C-terminal fragment.	30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.785
RCIX411	rps7p	RCIX411	LRC363	Ribonuclease II family protein, C-terminal fragment.	30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.777
RCIX411	rrp4	RCIX411	RCIX2123	Ribonuclease II family protein, C-terminal fragment.	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.	0.922
RCIX411	rrp41p	RCIX411	RCIX2124	Ribonuclease II family protein, C-terminal fragment.	Putative exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails.	0.926
RCIX411	rrp42p	RCIX411	RCIX2125	Ribonuclease II family protein, C-terminal fragment.	Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.	0.931
csl4	RCIX2092	LRC269	RCIX2092	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	Hypothetical protein.	0.710
csl4	RCIX411	LRC269	RCIX411	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	Ribonuclease II family protein, C-terminal fragment.	0.933
csl4	rps12p	LRC269	LRC361	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.752
csl4	rps15p	LRC269	LRC56	Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	30S ribosomal protein S15P.	0.761

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About