Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX414Hypothetical protein; Similar to RCIX409 and RCIX412. (746 aa)    
Predicted Functional Partners:
LRC452
Hypothetical protein.
  
    0.745
RCIX413
Hypothetical protein.
       0.737
RCIX510
Hypothetical protein.
  
    0.737
RCIX2504
Hypothetical protein.
  
     0.726
RRC20
Hypothetical protein.
  
    0.721
LRC410
Hypothetical protein.
  
     0.707
RRC185
Hypothetical protein.
  
     0.696
RRC479
Hypothetical protein.
  
     0.687
tnp-22
Predicted transposase (IS4).
  
     0.683
tnp-8
Putative transposase (IS4).
  
     0.683
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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